All modules for which code is available
- bioverse.adapter
- bioverse.adapters.alpha_fold
- bioverse.adapters.alpha_fold_exclusion
- bioverse.adapters.alpha_fold_inv_bench
- bioverse.adapters.ares
- bioverse.adapters.protein_gym
- bioverse.adapters.protein_inv_bench
- bioverse.adapters.proteinshake
- bioverse.adapters.quantum_machines
- bioverse.adapters.revised_molecular_dynamics
- bioverse.adapters.weng_docking
- bioverse.benchmark
- bioverse.data
- bioverse.dataset
- bioverse.metric
- bioverse.metrics.auprc
- bioverse.metrics.auroc
- bioverse.metrics.balanced_binary_accuracy
- bioverse.metrics.balanced_multi_class_accuracy
- bioverse.metrics.binary_accuracy
- bioverse.metrics.blosum_score
- bioverse.metrics.coefficient_of_determination
- bioverse.metrics.enrichment_factor
- bioverse.metrics.f1_score
- bioverse.metrics.fmax
- bioverse.metrics.macro_precision
- bioverse.metrics.macro_recall
- bioverse.metrics.mean_absolute_error
- bioverse.metrics.mean_active_rank
- bioverse.metrics.mean_angular_error
- bioverse.metrics.mean_squared_error
- bioverse.metrics.multi_class_accuracy
- bioverse.metrics.multi_label_accuracy
- bioverse.metrics.pearsons_r
- bioverse.metrics.perplexity
- bioverse.metrics.precision
- bioverse.metrics.recall
- bioverse.metrics.recovery
- bioverse.metrics.spearmans_rho
- bioverse.metrics.top_k_accuracy
- bioverse.metrics.topk_recovery
- bioverse.processor
- bioverse.processors.cif
- bioverse.processors.pdb
- bioverse.processors.xyz
- bioverse.sampler
- bioverse.samplers.frame
- bioverse.samplers.interface_pair
- bioverse.samplers.molecule
- bioverse.samplers.mutation
- bioverse.samplers.pairwise
- bioverse.samplers.residue
- bioverse.task
- bioverse.tasks.inverse_folding
- bioverse.tasks.masked_residue_prediction
- bioverse.tasks.mutation_effect_prediction
- bioverse.tasks.pairwise_property_prediction
- bioverse.tasks.property_prediction
- bioverse.tasks.virtual_screen
- bioverse.transform
- bioverse.transforms.backbone_bond_angles
- bioverse.transforms.backbone_edge_rbf
- bioverse.transforms.backbone_node_rbf
- bioverse.transforms.core_and_surface_distance
- bioverse.transforms.create_feature_from_others
- bioverse.transforms.curvature
- bioverse.transforms.deduplicate_atoms
- bioverse.transforms.dihedrals
- bioverse.transforms.edge_local_directions
- bioverse.transforms.edge_pos_emb
- bioverse.transforms.edge_vectors
- bioverse.transforms.filter_residues_by_value
- bioverse.transforms.filter_sequence_length
- bioverse.transforms.identity
- bioverse.transforms.is_surface_residue
- bioverse.transforms.knn_graph
- bioverse.transforms.linear_residue_graph
- bioverse.transforms.local_reference_frames
- bioverse.transforms.normalize_vector
- bioverse.transforms.one_hot_atom_features
- bioverse.transforms.one_hot_residue_features
- bioverse.transforms.orientations
- bioverse.transforms.rbf
- bioverse.transforms.relative_edge_frame_positions
- bioverse.transforms.residue_backbone_atoms
- bioverse.transforms.residue_frames
- bioverse.transforms.residue_local_directions
- bioverse.transforms.residue_positions
- bioverse.transforms.residue_pseudo_cb
- bioverse.transforms.scene_split
- bioverse.transforms.sidechains
- bioverse.transforms.standardize
- bioverse.transforms.standardize_pairwise
- bioverse.transforms.tokenize_atoms
- bioverse.transforms.tokenize_property
- bioverse.transforms.tokenize_residues
- bioverse.utilities.io